I haven't had any of the issues that anyone is talking about. Bot got me 1-34 agility yesterday, and going to get 35-40 agil today. Only times I've had to stop the bot was when I needed to talk to someone or on the rare occasion that it got stuck at the top stop going down the tree.
EDIT: saw that you updated at 5/28. Should I delete the old version and redownload the newest?